Training Datasets for iC10 Package

Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.


Reference manual

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1.3.1 by Oscar M. Rueda, 3 years ago

Browse source code at

Authors: Oscar M Rueda and Jose Antonio Seoane Fernandez

Documentation:   PDF Manual  

GPL-3 license

Depended on by iC10.

See at CRAN