Hierarchical Inference Testing

Hierarchical inference testing (HIT) for (generalized) linear models with correlated covariates applicable to high-dimensional settings.


CRAN

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Description:

Hierarchical inference testing (HIT) for (generalized) linear models with correlated covariates. HIT is furthermore applicable to high-dimensional settings. For details see:

Mandozzi, J. and Buehlmann, P. (2015). Hierarchical testing in the high-dimensional setting with correlated variables. Journal of the American Statistical Association. Preprint

Klasen, J. R. et al. (2016). A multi-marker association method for genome-wide association studies without the need for population structure correction. Nature Communications. Paper

Installation:

The package can be installed from CRAN,

install.packages("hit")
 

or via devtools , if you haven't devtools installed yet you have to do so first.

# install.packages("devtools")
devtools::install_github("QTCAT/hit")

Example:

The hit-function example gives an overview of the functionality of the package and can be accessed once the package is loaded.

library(hit)
example(hit)

License © 2016 JR Klasen

News

hit v0.4.0 (Release date: 2016-11-16)

Changes:

  • hit: second path for lambda estimation, with a new lambda for each sample split.

hit v0.3.1 (Release date: 2016-09-15)

Changes:

  • reorder: a more general reorder function for hierarchy

hit v0.3.0 (Release date: 2016-08-29)

Changes:

  • hit: remove the alpha optimization and allow only one alpha value

  • hit: allow the response variable (y) to be Poisson distributed

  • summary.hit: bug fix

hit v0.2-2 (Release date: 2016-04-26)

Changes:

  • hit: bug fixes in summary and some other small fixes

hit v0.2-1 (Release date: 2016-01-11)

Changes:

  • hit: sticks to cross-validation as selection method

  • hit: arguments have changed

hit v0.2-0 (Release date: 2015-12-04)

Changes:

  • fast.anova: a new fast.glmanova method for GLM's

  • hit: now is able to deal with binomial responses

  • hit: a new selection method for the active set

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("hit")

0.4.0 by Jonas Klasen, 2 years ago


https://github.com/QTCAT/hit


Report a bug at https://github.com/QTCAT/hit/issues


Browse source code at https://github.com/cran/hit


Authors: Jonas Klasen [aut, cre]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports stats, parallel, Rcpp, glmnet, speedglm

Suggests testthat

Linking to Rcpp


See at CRAN