Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm

The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.


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Reference manual

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install.packages("hapassoc")

1.2-8 by K. Burkett, 4 years ago


http://stat.sfu.ca/statgen/research/hapassoc.html


Browse source code at https://github.com/cran/hapassoc


Authors: K. Burkett <[email protected]> , B. McNeney <[email protected]> , J. Graham <[email protected]> , with code for case-control data contributed by Zhijian Chen <[email protected]>


Documentation:   PDF Manual  


Task views: Statistical Genetics


GPL-2 license


Depends on stats


See at CRAN