Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm

The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.


Reference manual

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1.2-8 by K. Burkett, 7 years ago

Browse source code at

Authors: K. Burkett <[email protected]> , B. McNeney <[email protected]> , J. Graham <[email protected]> , with code for case-control data contributed by Zhijian Chen <[email protected]>

Documentation:   PDF Manual  

Task views: Statistical Genetics

GPL-2 license

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See at CRAN