grex
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
Convert 'Ensembl' gene identifiers from Genotype-Tissue Expression (GTEx) data to identifiers in other annotation systems, including 'Entrez', 'HGNC', and 'UniProt'.
grex offers a minimal dependency solution for mapping Ensembl gene IDs to Entrez IDs, HGNC gene symbols, and UniProt IDs, for Genotype-Tissue Expression (GTEx) data.
Installation
Install grex from CRAN:
install.packages("grex")Or try the development version on GitHub:
# install.packages("devtools")devtools::install_github("road2stat/grex")Browse the vignette (or open with vignette("grex") in R) for a quick-start guide.
Links
- Website: https://nanx.me/grex/
- CRAN: https://cran.r-project.org/package=grex
- GitHub: https://github.com/road2stat/grex
Contribute
To contribute to this project, please take a look at the Contributing Guidelines first. Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.
News
grex 1.8 (2018-04-23)
Improvements
- Update reference database from the latest development version of
org.Hs.eg.db(3.6.0). - Add GTEx V7 Ensembl ID data:
gtexv7.
grex 1.7 (2017-11-05)
Improvements
- Update reference database from the latest release version of
org.Hs.eg.db(3.4.2).
grex 1.6 (2017-09-27)
Improvements
- Use system font stack instead of Google Fonts in vignettes to avoid pandoc SSL issue.
grex 1.5 (2017-06-05)
Improvements
- Add pkgdown-based website.
- Update reference database from the latest release version of
org.Hs.eg.db(3.4.1).
grex 1.4 (2016-11-20)
New Features
- Add GTEx V6p Ensembl ID data:
gtexv6p. - Update reference database from the latest release version of
org.Hs.eg.db(3.4.0). - Add attribute "gene type" to the mapping table (Thanks: Prof. Matthew Stephens).
grex 1.0 (2016-06-10)
New Features
- First version.