Genetics Input/Output Functions

Implements readers and writers for file formats associated with genetics data. Reading and writing plink BED/BIM/FAM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles plink and eigenstrat tables (FAM, BIM, IND, and SNP files). There are also "make" functions for FAM and BIM tables with default values to go with simulated genotype data.


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install.packages("genio")

1.0.10 by Alejandro Ochoa, 4 months ago


https://github.com/OchoaLab/genio


Report a bug at https://github.com/OchoaLab/genio/issues


Browse source code at https://github.com/cran/genio


Authors: Alejandro Ochoa [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports readr, tibble, Rcpp

Suggests testthat, knitr, rmarkdown, lfa, BEDMatrix, snpStats, pryr

Linking to Rcpp


See at CRAN