Retrieves Gene Expression Dataset and Gene Symbols from GEO Code

A function that reads in the GEO code of a gene expression dataset, retrieves its data from GEO, (optional) retrieves the gene symbols of the dataset, and returns a simple dataframe table containing all the data. Platforms available: GPL11532, GPL23126, GPL6244, GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL < https://ftp.ncbi.nlm.nih.gov/geo/series/>.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("geneExpressionFromGEO")

0.3 by Davide Chicco, 2 months ago


https://github.com/davidechicco/geneExpressionFromGEO


Report a bug at https://stackoverflow.com/questions/tagged/geneExpressionFromGEO


Browse source code at https://github.com/cran/geneExpressionFromGEO


Authors: Davide Chicco [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports Biobase, annotate, GEOquery

Suggests knitr, rmarkdown


See at CRAN