Generalized Contrastive Principal Component Analysis

Implements dense and sparse generalized contrastive principal component analysis (gcPCA) with S3 fit objects and methods for prediction, summaries, and plotting. The gcPCA is a hyperparameter-free method for comparing high-dimensional datasets collected under different experimental conditions to reveal low-dimensional patterns enriched in one condition compared to the other. Method details are described in de Oliveira, Garg, Hjerling-Leffler, Batista-Brito, and Sjulson (2025) .


Reference manual

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install.packages("gcpca")

0.0.1 by Eliezyer de Oliveira, 6 months ago


https://github.com/SjulsonLab/generalized_contrastive_PCA


Report a bug at https://github.com/SjulsonLab/generalized_contrastive_PCA/issues


Browse source code at https://github.com/cran/gcpca


Authors: Eliezyer de Oliveira [aut, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports graphics, stats

Suggests testthat


See at CRAN