Create descriptive file names with ease. New file names are automatically (but optionally) time stamped and placed in date stamped directories. Streamline your analysis pipeline with input and output file names that have informative tags and proper file extensions.
filenamer is an R package for managing file names with time stamps, tags, and
subdirectories. It facilitates quick derivation of new file names and supports
conversions to and from character vectors.
Clone the repository, build the documentation with roxygen2, then install.
$ git clone https://bitbucket.org/djhshih/filenamer.git $ cd filename $ R R> library(roxygen2) R> roxygenize() R> quit() $ R CMD INSTALL .
We can create a
filenamer object by conversion from a
f <- as.filename("cars.txt")
Alternatively, we can use the
filename constructor, which by default
apply a time stamp (when the file name is created) and places the target file
in a date-stamped directory.
f <- filename("cars", ext="txt") as.character(f) ##  "2014-12-09/cars_20141209T184403.txt" # tag() tags a file name and returns the resulting character vector; # without any extra argument, tag() just type casts tag(f) ##  "2014-12-09/cars_20141209T184403.txt"
We can also do only date stamping, or turn off the stamping completely.
# Set option to enable only date stamping options(filename.timestamp=1) # Disable automatic date-stamped subdirectory placement options(filename.path.timestamp=0) f <- filename("cars", ext="txt") tag(f) ##  "cars_2014-12-09.txt" # Set option to disable stamping options(filename.timestamp=0) f <- filename("cars", ext="txt") tag(f) ##  "cars.txt"
We can manage
# Insert a tag to derive a new file name for the normalized data g <- insert(f, tag="norm") tag(g) ##  "cars_norm.txt" # Replace the extension # (if we start with a character vector, we end with a character vector) g <- set_ext("cars.txt", "csv") g ##  "cars.csv"
We can also use the
tag function for
data(cars) pdf(tag(f, ext="pdf", replace=TRUE)) plot(dist ~ speed, cars) dev.off()
Together with the
io package, we can name and create files
painlessly with time stamping and directory organization. The directory
structure is automatically created by
# Set options back to default values options(filename.timestamp=2) options(filename.path.timestamp=1) library(io) f <- filename("cars", path="out", ext="txt") qwrite(cars, f) qdraw(plot(dist ~ speed, cars), set_fext(f, "pdf")) # Sometimes when the plot has many graphical elements, # you may wish to output the plot in a bitmap format; # you do so by simply changing the file extension qdraw(plot(dist ~ speed, cars), set_fext(f, "png")) list.files("out/2014-12-09") ##  "cars_20141209T191048.pdf" "cars_20141209T191048.txt"
The time stamps on the file names prevent them from being clobbered on repeat runs (that are more than a second apart). The files are automatically organized into subdirectories. Accordingly, you can keep all versions of your results, and you have ready access to the latest version in the base directory:
# Symbolic links are automatically created with simpler names list.files("out", pattern="cars") ##  "cars.pdf" "cars.txt"