Significant Interval Discovery with Categorical Covariates

A method which uses the Cochran-Mantel-Haenszel test with significant pattern mining to detect intervals in binary genotype data which are significantly associated with a particular phenotype, while accounting for categorical covariates.


Reference manual

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0.2.7 by Dean Bodenham, 5 years ago

Browse source code at

Authors: Felipe Llinares Lopez , Dean Bodenham

Documentation:   PDF Manual  

GPL-2 | GPL-3 license

Imports Rcpp

Depends on bindata

Suggests testthat

Linking to Rcpp

System requirements: C++11

See at CRAN