Cyanobacteria Population Identification for Flow Cytometry

An approach to filter out and/or identify synechococcus type cyanobacteria cells from all particles measured via flow cytometry. It combines known characteristics of these cyanobacteria strains alongside gating techniques developed by Mehrnoush, M. et al. (2015) in the 'flowDensity' package to identify and separate these cyanobacteria cells from other cell types. Aside the gating techniques in the 'flowDensity' package, an EM style clustering technique is also developed to identify these cyanobacteria cell populations.


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install.packages("cyanoFilter")

0.1.2 by Oluwafemi Olusoji, a month ago


https://github.com/fomotis/cyanoFilter


Report a bug at https://github.com/fomotis/cyanoFilter/issues


Browse source code at https://github.com/cran/cyanoFilter


Authors: Oluwafemi Olusoji [aut, cre] , Aerts Marc [ctb] , Delaender Frederik [ctb] , Neyens Thomas [ctb] , Spaak jurg [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports flowCore, flowDensity, graphics, grDevices, methods, RColorBrewer, Rdpack, stats, stringr, utils

Depends on Biobase

Suggests dplyr, magrittr, knitr, rmarkdown, tidyr


See at CRAN