Mutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer)

A data package with 2 main package variables: 'signature' and 'etiology'. The 'signature' variable contains the latest mutational signature profiles released on COSMIC < https://cancer.sanger.ac.uk/signatures/> for 4 mutation types: * single base substitutions in the context of preceding and following bases, * Strand bias single base substitutions: single base substitutions from transcribed regions, that take into consideration the the transcribed versus non-transcribed strand, * Doublet base substitutions, and * Small insertions and deletions. The 'etiology' variable provides the known or hypothesized causes of signatures. 'cosmicsig' stands for COSMIC signatures. Please run ?'cosmicsig' for more information.


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install.packages("cosmicsig")

1.0.7 by Steven Rozen, a month ago


https://github.com/Rozen-Lab/cosmicsig


Report a bug at https://github.com/Rozen-Lab/cosmicsig/issues


Browse source code at https://github.com/cran/cosmicsig


Authors: Steven Rozen [aut, cre] , Nanhai Jiang [aut]


Documentation:   PDF Manual  


GPL-3 license


Suggests testthat, ICAMS, usethis


See at CRAN