Chronological Ordering for Fossils and Environmental Events

While individual calibrated radiocarbon dates can span several centuries, combining multiple dates together with any chronological constraints can make a chronology much more robust and precise. This package uses Bayesian methods to enforce the chronological ordering of radiocarbon and other dates, for example for trees with multiple radiocarbon dates spaced at exactly known intervals (e.g., 10 annual rings). For methods see Christen 2003 . Another example is sites where the relative chronological position of the dates is taken into account - the ages of dates further down a site must be older than those of dates further up (Buck, Kenworthy, Litton and Smith 1991 ; Nicholls and Jones 2001 ). The paper accompanying this R package is Blaauw et al. 2024 .


coffee

Chronological Ordering for Fossils and Environmental Events

It's quite fortunate that the above title can be acronymised to coffee. While individual calibrated radiocarbon dates can span several centuries, combining multiple dates together with any chronological constraints can make a chronology much more robust and precise.

This package uses Bayesian methods to enforce the chronological ordering of radiocarbon and other dates, for example for trees with multiple radiocarbon dates spaced at exactly known intervals (e.g., 10 annual rings). Another example is sites where the relative chronological position of the dates is taken into account - the ages of dates further down a site must be older than those of dates further up.

Please check out the vignettes folder for a tutorial. In short, install the package from github, load it and run the two main functions:

require(devtools)
install_github("Maarten14C/coffee")
library(coffee)
rings()
strat()

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("coffee")

0.4.3 by Maarten Blaauw, 2 years ago


https://github.com/Maarten14C/coffee


Browse source code at https://github.com/cran/coffee


Authors: Maarten Blaauw [aut, cre] , Marco A. Aquino Lopez [aut, ctb] , J. Andres Christen [aut, ctb, cph]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports data.table, rintcal, rice

Suggests knitr, rmarkdown, utf8


See at CRAN