Clustering Genotypes in Haplotypes

One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci). clusterhap groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, clusterhap calculates such probability from relative frequencies.


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Reference manual

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install.packages("clusterhap")

0.1 by Gaston Quero, 2 years ago


Browse source code at https://github.com/cran/clusterhap


Authors: Gaston Quero <gastonquero@gmail.com> and Sebastian Simondi <sebastian.simondi@gmail.com> , with contributions from Victoria Bonnecarrere and Lucia Gutierrez


Documentation:   PDF Manual  


GPL-3 license


Imports graphics, utils

Suggests knitr, rmarkdown, testthat


See at CRAN