Clustering Genotypes in Haplotypes

One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci). clusterhap groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, clusterhap calculates such probability from relative frequencies.


Reference manual

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0.1 by Gaston Quero, 9 months ago

Browse source code at

Authors: Gaston Quero <> and Sebastian Simondi <> , with contributions from Victoria Bonnecarrere and Lucia Gutierrez

Documentation:   PDF Manual  

GPL-3 license

Imports graphics, utils

Suggests knitr, rmarkdown, testthat

See at CRAN