Segmentation Methods for Array CGH Analysis

Dedicated to the analysis of CGH (Comparative Genomic Hybridization) array profiles using segmentation models. 'cghseg' package is intended to detect breakpoints from CGH profiles. It can handle both single and multiple profiles analysis, to perform segmentation, normalization and calling. Methods for joint segmentation are described in : Picard and al. (2011), .


Reference manual

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1.0.5 by Samuel Blanck, 14 days ago

Browse source code at

Authors: Franck Picard , Mark Hoebeke , Emilie Lebarbier , Vincent Miele , Guillem Rigaill , Stephane Robin

Documentation:   PDF Manual  

GPL (>= 2) license

Depends on methods, parallel

See at CRAN