Segmentation Methods for Array CGH Analysis

Dedicated to the analysis of CGH (Comparative Genomic Hybridization) array profiles using segmentation models. 'cghseg' package is intended to detect breakpoints from CGH profiles. It can handle both single and multiple profiles analysis, to perform segmentation, normalization and calling. Methods for joint segmentation are described in : Picard and al. (2011), .


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("cghseg")

1.0.5 by Samuel Blanck, 14 days ago


Browse source code at https://github.com/cran/cghseg


Authors: Franck Picard , Mark Hoebeke , Emilie Lebarbier , Vincent Miele , Guillem Rigaill , Stephane Robin


Documentation:   PDF Manual  


GPL (>= 2) license


Depends on methods, parallel


See at CRAN