bedr

Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.

Reference manual

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install.packages("bedr")

1.1.5 by Paul C. Boutros, 9 months ago

https://github.com/theboutroslab/package-bedr

Report a bug at https://github.com/theboutroslab/package-bedr/issues

Browse source code at https://github.com/cran/bedr

Authors: Syed Haider [aut] , Daryl Waggott [aut] , Emilie Lalonde [ctb] , Clement Fung [ctb] , Helena Winata [ctb] , Dan Knight [ctb] , Michael Chirico [ctb] , Melinda Luo [ctb] , Paul C. Boutros [aut, cre, cph]

Documentation:   PDF Manual  

GPL-2 license

Imports testthat, VennDiagram, data.table, R.utils, yaml, parallel, grid

Suggests knitr, rmarkdown

System requirements: Preferred genomic operations engine: 'BEDTools', 'BEDOPS' and 'Tabix (>= 1.3)'.

Imported by Ravages, chicane.

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