Cell Atlas Approximations

Provides an interface in R to cell atlas approximations. See the vignette under "Getting started" for instructions. You can also explore the reference documentation for specific functions. Additional interfaces and resources are available at < https://atlasapprox.readthedocs.io>.

R

The R interface can be used to access the atlas approximation API from R. It uses caching to speed up multiple requests so it is generally as fast or faster than using the REST API directly.

Requirements

You need the following R packages:

• httr

Installation

You can install the package from CRAN (WIP!):

install.packages("atlasapprox")

Getting started

Load the library:

library("atlasapprox")

You now have access to the GetXXX functions within atlasapprox, e.g.:

human_organs <- GetOrgans(organism = "h_sapiens")

See the Reference page for details on each function.