Analysis of Virulence

Epidemiological population dynamics models traditionally define a pathogen's virulence as the increase in the per capita rate of mortality of infected hosts due to infection. This package provides functions allowing virulence to be estimated by maximum likelihood techniques. The approach is based on the analysis of relative survival comparing survival in matching cohorts of infected vs. uninfected hosts (Agnew 2019) .


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Reference manual

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install.packages("anovir")

0.1.0 by Philip Agnew, 6 months ago


https://www.biorxiv.org/content/10.1101/530709v1


Browse source code at https://github.com/cran/anovir


Authors: Philip Agnew [aut, cre] , Jimmy Lopez [aut]


Documentation:   PDF Manual  


GPL-3 license


Depends on bbmle, stats4

Suggests knitr, rmarkdown, stats, testthat


See at CRAN