Wavelet Analysis of Genomic Data from Admixed Populations

Implements wavelet-based approaches for describing population admixture. Principal Components Analysis (PCA) is used to define the population structure and produce a localized admixture signal for each individual. Wavelet summaries of the PCA output describe variation present in the data and can be related to population-level demographic processes. For more details, see J Sanderson, H Sudoyo, TM Karafet, MF Hammer and MP Cox. 2015. Reconstructing past admixture processes from local genomic ancestry using wavelet transformation. Genetics 200:469-481 .


Reference manual

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install.packages("adwave")

1.4 by Murray Cox, a year ago


https://doi.org/10.1534/genetics.115.176842


Browse source code at https://github.com/cran/adwave


Authors: Jean Sanderson [aut] , Murray Cox [aut, cre]


Documentation:   PDF Manual  


GPL (>= 2) license


Depends on waveslim


See at CRAN