Package Admix for Admixture (aka Contamination) Models

Implements several methods to estimate the unknown quantities related to two-component admixture models, where the two components can belong to any distribution (note that in the case of multinomial mixtures, the two components must belong to the same family). Estimation methods depend on the assumptions made on the unknown component density (see Bordes and Vandekerkhove (2010) ; Patra and Sen (2016) ); Milhaud, Pommeret, Salhi and Vandekerkhove (2021) < https://hal.archives-ouvertes.fr/hal-03201760>). In practice, one can estimate both the mixture weight and the unknown component density in a wide variety of frameworks. On top of that, hypothesis tests can be performed in one and two-samples contexts to test the unknown component density. Finally, clustering of unknown mixture components is also feasible in a K-samples setting.


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Reference manual

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install.packages("admix")

0.3.2 by Xavier Milhaud, 3 months ago


https://github.com/XavierMilhaud/admix


Report a bug at https://github.com/XavierMilhaud/admix/issues


Browse source code at https://github.com/cran/admix


Authors: Xavier Milhaud [aut, cre] , Pierre Vandekerkhove [ctb] , Denys Pommeret [ctb] , Yahia Salhi [ctb]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports base, fdrtool, graphics, Iso, latex2exp, MASS, methods, orthopolynom, pracma, Rcpp, stats, utils

Suggests rmutil, doParallel, foreach, evd, logitnorm, flexsurv, plyr, reshape2, gridExtra, lattice, testthat, knitr, rmarkdown, markdown

Linking to Rcpp


See at CRAN