Efficient and Accurate P-Value Computation for Position Weight Matrices

In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. Touzet and Varre (2007) .


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install.packages("TFMPvalue")

0.0.8 by Ge Tan, 9 months ago


https://github.com/ge11232002/TFMPvalue


Report a bug at https://github.com/ge11232002/TFMPvalue/issues


Browse source code at https://github.com/cran/TFMPvalue


Authors: Ge Tan <[email protected]>


Documentation:   PDF Manual  


GPL-2 license


Imports Rcpp

Suggests testthat

Linking to Rcpp

System requirements: C++11


See at CRAN