Statistical Approach via Pseudo-Value Information and Estimation

'SOHPIE' (pronounced as SOFIE) is a novel pseudo-value regression approach for differential co-abundance network analysis of microbiome data, which can include additional clinical covariate in the model. The full methodological details can be found in Ahn S and Datta S (2023) .


Reference manual

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install.packages("SOHPIE")

1.0.6 by Seungjun Ahn, 3 years ago


Browse source code at https://github.com/cran/SOHPIE


Authors: Seungjun Ahn [cre, aut, trl] , Somnath Datta [ctb, ths]


Documentation:   PDF Manual  


GPL-3 license


Imports robustbase, parallel, dplyr, fdrtool, gtools, stats

Suggests knitr, rmarkdown, testthat


See at CRAN