Generate knockoffs for genetic data and hidden Markov models.
For more information, see the website below and the accompanying papers:
"Gene hunting with hidden Markov model knockoffs", Sesia et al., Biometrika, 2019, (
Added a new vignette describing the usage of SNPknock with genotype data.
Changed the functions loading parameter estimates produced by fastPhase. Using "_origchar" file instead of first row of X. Added support for haplotype HMM. Using integer storage for X.
Improved memory efficiency and added support for multithreading. Added more efficient functions for generating knockoff copies of unphased genotypes and phased haplotypes.
Fixed bug in the generation of knockoff copies for unphased genotypes and phased haplotypes.