Single Cell Linkage by Distance Estimation is SLIDE

This statistical method uses the nearest neighbor algorithm to estimate absolute distances between single cells based on a chosen constellation of surface proteins, with these distances being a measure of the similarity between the two cells being compared. Based on Sen, N., Mukherjee, G., and Arvin, A.M. (2015) .


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Reference manual

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install.packages("SLIDE")

1.0.0 by Arjun Panda, 8 months ago


Browse source code at https://github.com/cran/SLIDE


Authors: Gourab Mukherjee [aut] , Arjun Panda [aut, cre] , Ann Arvin [aut] , Adrish Sen [aut] , Nandini Sen [aut]


Documentation:   PDF Manual  


GPL-3 license


Suggests knitr, rmarkdown


See at CRAN