Single-Cell RNA-Seq Gene Expression Recovery

An implementation of a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data. See Huang M, et al (2018) for more details.

SAVER 1.1.2

SAVER (Single-cell Analysis Via Expression Recovery) implements a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data.

Installation

You can install SAVER from CRAN by running:

install.packages("SAVER")
library(SAVER)

You can also install the most recent updates of SAVER from github with:

# install.packages("devtools")
devtools::install_github("mohuangx/SAVER")

Reference

For more information about the method, check out the website, tutorial, and paper.