News

SAVER 1.1.1 (September 26, 2018)

• Fix bug when inputted mu values are far from observed
• Add get.mu function to get prior mean predictions.

SAVER 1.1.0 (September 2, 2018)

• Improve finish time estimation
• Allow input of prior predictions
• Can set ncores to set up parallel backend
• Update documentation
• Make SAVER tutorial vignette
• Allow input of sparse matrices
• Allow return of estimates matrix only

SAVER 1.0.0 (April 25, 2018)

• First official release

SAVER 0.4.0 (February 28, 2018)

• Implemented faster version of SAVER which is 20-30x faster
• No longer necessary to specify parallel=TRUE
• Implemented progress bar

SAVER 0.3.1 (January 29, 2018)

• Incorporate iterators package
• Implement mean expression cutoff for prediction matrix
• Fix minor bugs

SAVER 0.3.0 (September 19, 2017)

• Combine parallel output using unlist instead of Reduce.
  • Reduce is computationally intensive. Might cause issue #1.
• Add nlambda option to saver
• Incorporate bigmemory package
• Export cor.cells

SAVER 0.2.2 (August 13, 2017)

• Rewrote combine function of parallel implementation of saver
• Add null model option to saver

SAVER 0.2.1 (August 1, 2017)

• Rewrote parallel implementation of SAVER
• Added verbose, pred.cells, and predict.time options to saver

SAVER 0.2.0 (July 23, 2017)

• Addressed issue #1
• Add option to filter genes out for prediction in saver
• Reduced saver output
• Created correlation adjustment functions cor.genes and cor.cells

SAVER 0.1.3 (July 18, 2017)

• Addressed issue #1
• Remove requirement of saver object
• Created sample.saver function
• More accurate calculation of finish time
• Update version number

SAVER 0.1.2 (May 29, 2017)

• Added sample.saver to sample datasets from the posterior distribution.
• Documented dataset and package.
• Included size factor, number of genes and cells, and names to saver output.
• Created saver class.

SAVER 0.1.1 (May 9, 2017)

Prerelease version with documentation.

Reference manual