An Elastic-Net Regularized Presence-Only Model

Presence-only model with Elastic Net penalty is a regularized generalized linear model training on the presence-absence response. This package provides functions for tuning and fitting the presence-only model. The presence-only model can be used to predict regulatory effects of genetic variants at sequence-level resolution by integrating a large number of epigenetic features and massively parallel reporter assays (MPRAs).


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1.0 by Zikun Yang, a year ago

Browse source code at

Authors: Zikun Yang [aut, cre, cph] , Chen Wang [ctb] , Iuliana Ionita-Laza [aut, ctb]

Documentation:   PDF Manual  

GPL (>= 2) license

Imports Rcpp, PUlasso, glmnet, pROC

Linking to Rcpp, RcppArmadillo

See at CRAN