Plastome Assembly Coverage Visualization

Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) .


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("PACVr")

1.1.5 by Michael Gruenstaeudl, 6 months ago


https://github.com/michaelgruenstaeudl/PACVr


Report a bug at https://github.com/michaelgruenstaeudl/PACVr/issues


Browse source code at https://github.com/cran/PACVr


Authors: Michael Gruenstaeudl [aut, cre] (ORCID: , Gregory Smith [ctb] , Nils Jenke [ctb]


Documentation:   PDF Manual  


BSD 3-clause License + file LICENSE license


Imports Biostrings, dplyr, GenomicAlignments, GenomicRanges, IRanges, logger, read.gb, RCircos, grDevices, stats, utils, tidyr, pwalign, R6

Suggests testthat, rentrez


See at CRAN