Nested Association Mapping

Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) . It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.


Reference manual

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1.6 by Alencar Xavier, 11 days ago

Browse source code at

Authors: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.

Documentation:   PDF Manual  

GPL-3 license

Imports Rcpp, randomForest

Suggests knitr, rmarkdown, lme4, glmnet

Linking to Rcpp

Imported by SoyNAM.

See at CRAN