LDcorSV
Linkage Disequilibrium Corrected by the Structure and the Relatedness
Four measures of linkage disequilibrium are provided: the usual r^2 measure, the r^2_S measure (r^2 corrected by the structure sample), the r^2_V (r^2 corrected by the relatedness of genotyped individuals), the r^2_VS measure (r^2 corrected by both the relatedness of genotyped individuals and the structure of the sample).
LDcorSV
Linkage Disequilibrium Corrected by the Structure and the Relatedness