Functional Summary and Meta-Analysis of Gene Expression Data

Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.


Reference manual

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install.packages("KOGMWU")

1.2 by Mikhail V. Matz, 8 years ago


Browse source code at https://github.com/cran/KOGMWU


Authors: Mikhail V. Matz


Documentation:   PDF Manual  


GPL-3 license


Depends on pheatmap


See at CRAN