Simulation of Inter-Related Genomic Datasets

Generates three inter-related genomic datasets: methylation, gene expression and protein expression having user specified cluster patterns. The simulation utilizes the realistic inter- and intra- relationships from real DNA methylation, mRNA expression and protein expression data from the TCGA ovarian cancer study, Chalise (2016) .


Reference manual

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install.packages("InterSIM")

2.3.0 by Prabhakar Chalise, 2 years ago


Browse source code at https://github.com/cran/InterSIM


Authors: Prabhakar Chalise [aut, cre] , Rama Raghavan [aut] , Brooke Fridley [aut]


Documentation:   PDF Manual  


GPL license


Depends on MASS, NMF, tools


Imported by M3JF.

Depended on by IntNMF.


See at CRAN