Score Taxon-Level IgA Binding in IgA-Seq Experiments

Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments. This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) . Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.


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install.packages("IgAScores")

0.1.2 by Matthew Jackson, 2 months ago


https://doi.org/10.1101/2020.08.19.257501


Browse source code at https://github.com/cran/IgAScores


Authors: Matthew Jackson [aut, cre, cph]


Documentation:   PDF Manual  


GPL-3 license


Suggests knitr, markdown


See at CRAN