Integrated Methylation QTL Mapping and Allele-Specific Analysis

Performs mQTL (methylation quantitative-trait locus) mapping in bisulfite sequencing studies by fitting a binomial mixed model and then incorporating the allelic-specific methylation pattern. Based on Fan, Yue; Vilgalys, Tauras P.; Sun, Shiquan; Peng, Qinke; Tung, Jenny; Zhou, Xiang (2019) .


Reference manual

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1.0 by Michael Kleinsasser, 2 years ago

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Authors: Xiang Zhou [aut] , Shiquan Sun [aut] , Yue Fan [aut] , Michael Kleinsasser [cre]

Documentation:   PDF Manual  

GPL-2 license

Imports Rcpp, foreach, doParallel, parallel, Matrix

Linking to Rcpp, RcppArmadillo

See at CRAN