Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms

We propose a generalized linear regression with higher-order interaction terms to assess the influences of genomic features such as DNA-binding proteins and functional elements on long-range contacts from Hi-C experiments.


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install.packages("HiCglmi")

1.3 by Raphael Mourad, 10 months ago


Browse source code at https://github.com/cran/HiCglmi


Authors: Raphael Mourad


Documentation:   PDF Manual  


GPL-2 license


Imports IRanges, GenomeInfoDb, methods, GenomicRanges, Matrix, glmnet, rtracklayer, HiTC, MASS, S4Vectors


See at CRAN