Gene-Based Publication Activity Visualiser

Visualising publication activity per gene based on a gene list and a user-defined set of keywords utilising R 'rentrez' < https://cran.r-project.org/package=rentrez/> that provides 'NCBI' < https://www.ncbi.nlm.nih.gov> database search like in 'PubMed' < https://pubmed.ncbi.nlm.nih.gov>. It summarises the retrieved number of publications for each gene in an overview bar plot (saved as 'png' file) and by choice a summary table (as 'csv') that including the most recent 100 'PubMed' IDs and publication titles.


Reference manual

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install.packages("GeSciLiVis")

1.2.0 by Marina Leer, 3 years ago


Browse source code at https://github.com/cran/GeSciLiVis


Authors: Marina Leer [aut, cre, cph] , George Soultoukis [ctb] , Masoome Oveisi [ctb] , German Research Foundation [fnd] , German Ministry of Education and Research [fnd] , State of Brandenburg [fnd]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports rentrez, biomartr, grDevices, graphics, utils

Suggests knitr, rmarkdown, testthat


See at CRAN