Gaussian Process Ranking of Multiple Time Series

Implements a Gaussian process (GP)-based ranking method which can be used to rank multiple time series according to their temporal activity levels. An example is the case when expression levels of all genes are measured over a time course and the main concern is to identify the most active genes, i.e. genes which show significant non-random variation in their expression levels. This is achieved by computing Bayes factors for each time series by comparing the marginal likelihoods under time-dependent and time-independent GP models. Additional variance information from pre-processing of the observations is incorporated into the GP models, which makes the ranking more robust against model overfitting. The package supports exporting the results to 'tigreBrowser' for visualisation, filtering or ranking.


GPrank - R package

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Reference manual

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install.packages("GPrank")

0.1.4 by Hande Topa, 10 months ago


https://github.com/PROBIC/GPrank


Report a bug at https://github.com/PROBIC/GPrank/issues


Browse source code at https://github.com/cran/GPrank


Authors: Hande Topa [aut, cre] , Antti Honkela [aut]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports gptk, matrixStats, tigreBrowserWriter, RColorBrewer

Suggests knitr, rmarkdown


See at CRAN