Gene and Region Counting of Mutations ("GARCOM")

Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("GARCOM")

1.2.0 by Sanjeev Sariya, 5 days ago


Browse source code at https://github.com/cran/GARCOM


Authors: Sanjeev Sariya [aut, cre, cph] , Giuseppe Tosto [aut, cph]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports data.table, stats, vcfR

Suggests testthat


See at CRAN