Gene and Region Counting of Mutations ("GARCOM")

Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.


Reference manual

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1.2.0 by Sanjeev Sariya, a year ago

Browse source code at

Authors: Sanjeev Sariya [aut, cre, cph] , Giuseppe Tosto [aut, cph]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports data.table, stats, vcfR

Suggests testthat

See at CRAN