Tumor Clones Percentage Estimations

Includes R functions for the estimation of tumor clones percentages for both snp data and (whole) genome sequencing data. See Cheng, Y., Dai, J. Y., Paulson, T. G., Wang, X., Li, X., Reid, B. J., & Kooperberg, C. (2017). Quantification of multiple tumor clones using gene array and sequencing data. The Annals of Applied Statistics, 11(2), 967-991, for more details.


Reference manual

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1.0.1 by Xuan You, 5 months ago

Browse source code at https://github.com/cran/EstMix

Authors: Xuan You <[email protected]> , Yichen Cheng <[email protected]>

Documentation:   PDF Manual  

GPL (>= 2) license

Imports Rcpp, PSCBS

Linking to Rcpp, RcppArmadillo

See at CRAN