Computational Methods for Immune Cell-Type Subsets

Provided are Computational methods for Immune Cell-type Subsets, including:(1) DCQ (Digital Cell Quantifier) to infer global dynamic changes in immune cell quantities within a complex tissue; and (2) VoCAL (Variation of Cell-type Abundance Loci) a deconvolution-based method that utilizes transcriptome data to infer the quantities of immune-cell types, and then uses these quantitative traits to uncover the underlying DNA loci.


Reference manual

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1.0.4 by Yael Steuerman, 3 years ago ,

Browse source code at

Authors: Yael Steuerman [aut, cre] , Irit Gat-Viks [aut]

Documentation:   PDF Manual  

GPL-2 license

Imports glmnet, stats

Imported by ADAPTS.

See at CRAN