Computational Methods for Immune Cell-Type Subsets

Provided are Computational methods for Immune Cell-type Subsets, including:(1) DCQ (Digital Cell Quantifier) to infer global dynamic changes in immune cell quantities within a complex tissue; and (2) VoCAL (Variation of Cell-type Abundance Loci) a deconvolution-based method that utilizes transcriptome data to infer the quantities of immune-cell types, and then uses these quantitative traits to uncover the underlying DNA loci.


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Reference manual

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install.packages("ComICS")

1.0.4 by Yael Steuerman, 3 years ago


http://dcq.tau.ac.il/ , http://csgi.tau.ac.il/VoCAL/


Browse source code at https://github.com/cran/ComICS


Authors: Yael Steuerman [aut, cre] , Irit Gat-Viks [aut]


Documentation:   PDF Manual  


GPL-2 license


Imports glmnet, stats


Imported by ADAPTS.


See at CRAN