Bayesian Nonparametric Modeling in R

Germline and somatic locus data which contain the total read depth and B allele read depth using Bayesian model (Dirichlet Process) to cluster. Meanwhile, the cluster model can deal with the SNVs mutation and the CNAs mutation.


Reference manual

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install.packages("CSclone")

1.0 by Peter Wu, 10 years ago


Browse source code at https://github.com/cran/CSclone


Authors: Peter Wu <[email protected]>


Documentation:   PDF Manual  


GPL (>= 2) license


Depends on lpSolve, mcclust, moments, DNAcopy, stats


See at CRAN