Germline and somatic locus data which contain the total read depth and B allele read depth using Bayesian model (Dirichlet Process) to cluster. Meanwhile, the cluster model can deal with the SNVs mutation and the CNAs mutation.
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1.0 by Peter Wu, 10 years ago
Browse source code at https://github.com/cran/CSclone
Authors: Peter Wu <[email protected]>
Documentation: PDF Manual
GPL (>= 2) license
Depends on lpSolve, mcclust, moments, DNAcopy, stats
See at CRAN