Pre-Process DNA Copy Number (CN) Data for Detection of CN Events

DNA copy number data evaluation using both their initial form (copy number as a noisy function of genomic position) and their approximation by a piecewise-constant function (segmentation), for the purpose of identifying genomic regions where the copy number differs from the norm.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("CNprep")

2.2 by Guoli Sun, 4 years ago


Browse source code at https://github.com/cran/CNprep


Authors: Alex Krasnitz , Guoli Sun


Documentation:   PDF Manual  


GPL-2 license


Depends on parallel, mclust, rlecuyer, stats


See at CRAN