Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data

Classification is based on the recently developed phylogenetic approach by Assis and Bachtrog (2013). The method classifies the evolutionary mechanisms retaining pairs of duplicate genes (conservation, neofunctionalization, subfunctionalization, or specialization) by comparing gene expression profiles of duplicate genes in one species to those of their single- copy ancestral genes in a sister species.


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install.packages("CDROM")

1.1 by Raquel Assis, 3 years ago


Browse source code at https://github.com/cran/CDROM


Authors: Brent Perry <[email protected]> , Raquel Assis <[email protected]>


Documentation:   PDF Manual  


GPL-2 license


Imports graphics, grDevices, stats, utils


See at CRAN