Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data

Classification is based on the recently developed phylogenetic approach by Assis and Bachtrog (2013). The method classifies the evolutionary mechanisms retaining pairs of duplicate genes (conservation, neofunctionalization, subfunctionalization, or specialization) by comparing gene expression profiles of duplicate genes in one species to those of their single- copy ancestral genes in a sister species.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


1.1 by Raquel Assis, 3 years ago

Browse source code at

Authors: Brent Perry <[email protected]> , Raquel Assis <[email protected]>

Documentation:   PDF Manual  

GPL-2 license

Imports graphics, grDevices, stats, utils

See at CRAN