Detection of Statistically Significant Combinations of SNPs in Association Mapping

A significant pattern mining-based toolbox for region-based genome-wide association studies and higher-order epistasis analyses, implementing the methods described in Llinares-López et al. (2017) .


Reference manual

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0.6.1 by Dean Bodenham, a year ago

Browse source code at

Authors: Felipe Llinares-López [aut, cph] , Laetitia Papaxanthos [aut, cph] , Damian Roqueiro [aut, cph] , Matthew Baker [ctr] , Mikołaj Rybiński [ctr] , Uwe Schmitt [ctr] , Dean Bodenham [aut, cre, cph] , Karsten Borgwardt [aut, fnd, cph]

Documentation:   PDF Manual  

GPL (>= 2) license

Imports methods, Rcpp

Suggests testthat, knitr, rmarkdown

Linking to Rcpp

System requirements: C++11

See at CRAN