Detection of Statistically Significant Combinations of SNPs in Association Mapping

A significant pattern mining-based toolbox for region-based genome-wide association studies and higher-order epistasis analyses, implementing the methods described in Llinares-López et al. (2017) .


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Reference manual

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install.packages("CASMAP")

0.6.0 by Dean Bodenham, a year ago


Browse source code at https://github.com/cran/CASMAP


Authors: Felipe Llinares-López [aut, cph] , Laetitia Papaxanthos [aut, cph] , Damian Roqueiro [aut, cph] , Matthew Baker [ctr] , Mikołaj Rybiński [ctr] , Uwe Schmitt [ctr] , Dean Bodenham [aut, cre, cph] , Karsten Borgwardt [aut, fnd, cph]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports methods, Rcpp

Suggests testthat, knitr, rmarkdown

Linking to Rcpp

System requirements: C++11


See at CRAN