A Driver Discovery Tool for Cancer Whole Genomes

A method for finding an enrichment of cancer simple somatic mutations (SNVs and Indels) in functional elements across the human genome. 'ActiveDriverWGS' detects coding and noncoding driver elements using whole genome sequencing data.


Reference manual

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1.0.1 by Helen Zhu, a year ago

Browse source code at https://github.com/cran/ActiveDriverWGS

Authors: Helen Zhu [aut, cre] , Juri Reimand [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports BSgenome, BSgenome.Hsapiens.UCSC.hg19, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, plyr

Suggests knitr, testthat, rmarkdown

See at CRAN