Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).

ACNE: Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

Installation

R package ACNE is available on CRAN and can be installed in R as:

install.packages("ACNE")

Pre-release version

To install the pre-release version that is available in Git branch develop on GitHub, use:

remotes::install_github("HenrikBengtsson/ACNE", ref="develop")

This will install the package from source.