Array Based CpG Region Analysis Pipeline

It aims to identify candidate genes that are “differentially methylated” between cases and controls. It applies Student’s t-test and delta beta analysis to identify candidate genes containing multiple “CpG sites”.


Reference manual

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0.9.0 by Abdulmonem Alsaleh, 5 years ago

Browse source code at

Authors: Abdulmonem Alsaleh [cre, aut] , Robert Weeks [aut] , Ian Morison [aut] , RStudio [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports graphics, stats, utils

Suggests knitr, rmarkdown

System requirements: GNU make

See at CRAN