Cryptic Transcription Analysis in Yeast

Calculates cryptic scores for genes using the ratio (Cheung et al., 2008), the 3' enrichment method (DeGennaro et al., 2013) and the probabilistic method. It also provide methods to estimates cryptic transcription start sites.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("yCrypticRNAs")

0.99.2 by Nicole Uwimana, a year ago


https://bitbucket.org/nuwimana/ycrypticrnas


Report a bug at https://bitbucket.org/nuwimana/ycrypticrnas/issues


Browse source code at https://github.com/cran/yCrypticRNAs


Authors: Nicole Uwimana, Benjamin Haibe-Kains, Francois Robert


Documentation:   PDF Manual  


GPL-2 license


Imports biomaRt, data.table, IRanges, mclust, MESS, parallel, Rcpp, Rsamtools

Suggests knitr, testthat, rmarkdown

Linking to Rcpp


See at CRAN