Cryptic Transcription Analysis in Yeast

Calculates cryptic scores for genes using the ratio (Cheung et al., 2008), the 3' enrichment method (DeGennaro et al., 2013) and the probabilistic method. It also provide methods to estimates cryptic transcription start sites.


Reference manual

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0.99.2 by Nicole Uwimana, 2 years ago

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Authors: Nicole Uwimana, Benjamin Haibe-Kains, Francois Robert

Documentation:   PDF Manual  

GPL-2 license

Imports biomaRt, data.table, IRanges, mclust, MESS, parallel, Rcpp, Rsamtools

Suggests knitr, testthat, rmarkdown

Linking to Rcpp

See at CRAN