snp.plotter

Creates plots of p-values using single SNP and/or haplotype data. Main features of the package include options to display a linkage disequilibrium (LD) plot and the ability to plot multiple datasets simultaneously. Plots can be created using global and/or individual haplotype p-values along with single SNP p-values. Images are created as either PDF/EPS files.


News

snp.plotter 0.3.1 - 2010-11-22

  • Changed dependency back from GeneticsBase because GeneticsBase is not in the Bioconductor 2.7 release. The genetics package produces a obselete package warning; only the LD and genotype functions of the genetics package are used.

snp.plotter 0.4 - 2011-05-11

  • Support for scaling SNP names and symbols added making it easier to draw diagrams with a greater number of SNPs.

Reference manual

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install.packages("snp.plotter")

0.5.1 by Augustin Luna, 5 years ago


https://github.com/cannin/snp_plotter or http://cbdb.nimh.nih.gov/~kristin/snp.plotter.html


Browse source code at https://github.com/cran/snp.plotter


Authors: Augustin Luna <[email protected]> , Kristin K. Nicodemus <[email protected]> , <[email protected]>


Documentation:   PDF Manual  


Task views: Statistical Genetics


GPL (>= 2) license


Imports genetics

Depends on grid

Suggests knitr


See at CRAN