Creates plots of p-values using single SNP and/or haplotype data. Main features of the package include options to display a linkage disequilibrium (LD) plot and the ability to plot multiple datasets simultaneously. Plots can be created using global and/or individual haplotype p-values along with single SNP p-values. Images are created as either PDF/EPS files.


snp.plotter 0.3.1 - 2010-11-22

  • Changed dependency back from GeneticsBase because GeneticsBase is not in the Bioconductor 2.7 release. The genetics package produces a obselete package warning; only the LD and genotype functions of the genetics package are used.

snp.plotter 0.4 - 2011-05-11

  • Support for scaling SNP names and symbols added making it easier to draw diagrams with a greater number of SNPs.

Reference manual

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0.5.1 by Augustin Luna, 5 years ago or

Browse source code at

Authors: Augustin Luna <[email protected]> , Kristin K. Nicodemus <[email protected]> , <[email protected]>

Documentation:   PDF Manual  

Task views: Statistical Genetics

GPL (>= 2) license

Imports genetics

Depends on grid

Suggests knitr

See at CRAN