Detecting Gene Probes with Different Means or Variances Between Two Groups

A collection of functions to detect gene probes with different means or variances between two groups in (epi)-genomic data analysis, including classical F test and Levene's test for equal variance, likelihood ratio test for equal mean and equal variance, the wrappers for functions in R Bioconductor package 'missMethyl' (Phipson and Oshlack (2014) ), the implementation of the methods proposed by Ahn and Wang (2013) < https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621641/>, and the improved Ahn and Wang's methods that we proposed recently (Qiu and Li et al. (2017) < http://oprscience.com/wp-content/uploads/2016/07/new-score-tests-for-equality-of-variances-in-the-application-of-dna-methylation-data-analysis.pdf>).


News

v0.0.6 created on Oct. 5, 2017

(1) Thanks to CRAN Manager Swetlana Herbrandt, we fixed a few more bugs in DESCRIPTION file:

(a) replace 'Detecting Gene Probes Having' by 'Detecting Gene Probes with'

(b) write package names and software names in single quotes (e.g., 'missMethyl')

(c) do not capitalize 'Groups' in Description

v0.0.5 created on Oct. 4, 2017

(1) Thanks to CRAN Manager Swetlana Herbrandt, we fixed a few bugs in DESCRIPTION file:

(a) repeat the title in the Description

(b) no references in Description

v0.0.4 created on Oct. 4, 2017

(1) re-check if any thing is wrong.

v0.0.3 created on Oct. 3, 2017

(1) replace 'Genomic' by 'Gene' in the title of DESCRIPTION file

v0.0.2 created on Oct. 3, 2017

(1) fixed some typos in manual files

v0.0.1 created on Oct. 2, 2017

(1) create R package diffMeanVar

Reference manual

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install.packages("diffMeanVar")

0.0.6 by Weiliang Qiu, a year ago


Browse source code at https://github.com/cran/diffMeanVar


Authors: Xuan Li [aut, ctb] , Weiliang Qiu [aut, cre] , Yuejiao Fu [aut, ctb] , Xiaogang Wang [aut, ctb]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports MASS, graphics, lawstat, methylumi, grDevices

Depends on Biobase, missMethyl, stats


See at CRAN