MCMC Sampling of Gene Genealogies Conditional on Genetic Data

Sample ancestral trees conditional on phased or unphased SNP genotype data. The actual tree sampling is done using a C++ program that is launched within R. The package also contains functions for specifying the tree-sampling settings (pre-processing) and for storing and manipulating the sampled trees (post-processing). More information about 'sampletrees' can be found at <>.


Reference manual

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1.0.2 by Kelly Burkett, a year ago

Browse source code at

Authors: Kelly Burkett , Brad McNeney , Jinko Graham , Jean-Francois Lefebvre

Documentation:   PDF Manual  

GPL (>= 2) license

Imports Rcpp, haplo.stats, ape

Linking to Rcpp

See at CRAN