Posterior Predictive Checks of Coalescent Models

Conducts posterior predictive checks of coalescent models using gene and species trees generated by 'BEAST' or '*BEAST'. The functionality of P2C2M can be extended via two third-party R packages that are available from the author websites: 'genealogicalSorting' and 'phybase'. To use these optional packages, the installation of the Python libraries 'NumPy' (>= 1.9.0) and 'DendroPy' (= 3.12.0) is required.


Reference manual

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0.7.6 by Michael Gruenstaeudl, 4 years ago

Browse source code at

Authors: Michael Gruenstaeudl , Noah Reid

Documentation:   PDF Manual  

GPL (>= 2) license

Imports ape, ggplot2, rPython, stringr

Suggests genealogicalSorting, phybase, Rmpi, xtermStyle

System requirements: gcc (>= 4.9), Python (= 2.7)

See at CRAN